Tags down


How to separate images using watershed algorithm in Python

By : John Glenn
Date : September 15 2020, 12:00 PM
fixed the issue. Will look into that further How to separate indiviual images among multiple images after image segmentaion using watershed algorithm in Python The attached image is consists of 4 images , from which we need to apply image segmentation and separate individual image from those 4 images , We will flood fill it first
code :
import cv2;
import numpy as np;

# Read image
im_in = cv2.imread("2SNAT.jpg", cv2.IMREAD_GRAYSCALE);

# Threshold.
# Set values equal to or above 220 to 0.
# Set values below 220 to 255.

th, im_th = cv2.threshold(im_in, 220, 255, cv2.THRESH_BINARY_INV);

# Copy the thresholded image.
im_floodfill = im_th.copy()

# Mask used to flood filling.
# Notice the size needs to be 2 pixels than the image.
h, w = im_th.shape[:2]
mask = np.zeros((h+2, w+2), np.uint8)

# Floodfill from point (0, 0)
cv2.floodFill(im_floodfill, mask, (0,0), 255);

# Invert floodfilled image
im_floodfill_inv = cv2.bitwise_not(im_floodfill)

# Combine the two images to get the foreground.
im_out = im_th | im_floodfill_inv
im, contours, hierarchy = cv2.findContours(im_out.copy(), cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_NONE)

final_contours = []
for contour in contours:
    area = cv2.contourArea(contour)
    if area > 1000:
counter = 0        
for c in final_contours:
    counter = counter + 1
# for c in [final_contours[0]]:
    peri = cv2.arcLength(c, True)
    approx = cv2.approxPolyDP(c, 0.01 * peri, True)
    x,y,w,h = cv2.boundingRect(approx)
    print(x, y, w, h)
    aspect_ratio = w / float(h)

    if (aspect_ratio >= 0.8 and aspect_ratio <= 4):
        cv2.imwrite('splitted_{}.jpg'.format(counter), im_in[y:y+h, x:x+w])
cv2.imwrite('rectangled_split.jpg', im_in)

Share : facebook icon twitter icon

watershed algorithm in matlab

By : user3298874
Date : March 29 2020, 07:55 AM
this one helps. Here's one way to segment the image using watershed. There's plenty more you could do (e.g. fuse cells with two nuclei if they haven't completed cytokinesis yet), but the steps below should give you a first idea.
(1) Determine cell-background threshold, cell-nucleus threshold
code :
%# read image
img = imread('http://i.stack.imgur.com/nFDkX.png');
%# normalize to 0...1
imgN = double(img-min(img(:)))/(max(img(:)-min(img(:))));
th2 = graythresh(imgN(imgN>th1));

cellMsk = imgN>th1;
nucMsk = imgN>th2;

gf = exp((-xx.^2-yy.^2)/20);
filtImg = conv2(imgN,gf,'same');


filtImgM = imimposemin(-filtImg,nucMsk);
ws = watershed(filtImgM);
ws(~cellMsk) = 0;

lblImg = bwlabel(ws);


Image Segmentation, watershed, waterfall, p algorithm

By : user3429132
Date : March 29 2020, 07:55 AM
Hope that helps For the sake of completeness, an answer regarding the Hierarchical segmentation was posted on the ImageJ mailing list by Ignacio Arganda-Carreras. He implemented it on an experimental branch of MorphoLibJ.
All credits go to Ignacio!

Extracting contours after watershed algorithm

By : Ken Krutsch
Date : March 29 2020, 07:55 AM
help you fix your problem Found a way to do it! Contours after watershed algorithm This solves my problem.

Watershed algorithm – CT Lung segmentation

By : Golnar Ashkboos
Date : March 29 2020, 07:55 AM
Does that help I am searching for source code to segment Lung in CT images using watershed algorithm. Please let me know if you find any website / source code. , Relevant algorithms:

Over-segmentation of Watershed algorithm

By : Richard Hayden
Date : March 29 2020, 07:55 AM
it helps some times Use max(abs(x1-x2),abs(y1-y2)) as the distance metric (chessboard), and use eight-connected neighborhood in watershed function:
Related Posts Related Posts :
  • Program written with asyncio takes same time to run as the synchronous version
  • RNN : understanfingConcatenating layers
  • Convert DatetimeWithNanoseconds to date format in python firestore
  • Estimating pi with a Monte Carlo method results in a larger value than expected
  • Create subsets from Python list with suffix
  • How to merge first part of a list value prior to a character, based on the values after the character in python
  • Python, finding item in a list with variables
  • remove demarcation from text image - image processing
  • Cannot create a new environment or install libraries in Ananconda
  • Finding whether a sentence is positive, neutral or negative?
  • Reading license plate from image using OpenCV Python and Tesseract
  • how to run odoo combuted field on all records?
  • path is not reading unless it is in order
  • How to Create a DataFrame with Loops?
  • Displaying the occurrences in a Histogram with tkinter
  • Simulate Fourier Analysis with Python
  • Is there an elegant way to call a list of methods on the same object in Python?
  • When do we need socket and when do we need request?
  • Google Foobar challenge Power Hungry - failing test no. 3 [hidden] out of 5 test cases?
  • Pandas vs Numpy indexing: Why this fundamental difference in ordering of indices?
  • ImportError: cannot import name 'mylist' from 'mymodule'
  • Minesweeper: Reveal Surrounding Blocks Function Freezes
  • Python iterate through connected components in grayscale image
  • LinkedList delete functionality is deleting 2 nodes
  • Minesweeper Reveal Element Python
  • Discord.py bot not using proper text formatting in embeds, but only on mobile?
  • str() doesn't work in the body of my function
  • How to search a list with nested dictionary by dictionary value, returning the index of the list with the dictionary ele
  • Python requests, get() without a protocol?
  • How to run a Python code inside a custom package?
  • Can we filter dictionary based on 'id' in python?
  • Normalization before clustering
  • How to define the name of the model in a function
  • PyTorch CNN: Loss is unchanging
  • Plot square signal from binary array [1, 0, 1, 0, 0, 1, 0, 1, 1, 1, 0, 1]?
  • Something is turning my lambda function into def function when I run, how do i solve this?
  • Redisearch aggregate return top 5 of each group
  • How can i save a list/matrix in binary format in KDB?
  • Python coding for GPU
  • Extract value of name in pandas
  • How to get the value of a key value pair from a dictonary which is inside a list and where key starts with a very specif
  • Best place to work together on a python project?
  • DynamoDB - avoid data overwrite with primary partition key remaining the same for all data points
  • Appending (not replacing) items in a nested dictionary via a list of keys
  • Flask Post is not coming to the Same Page
  • TypeError: cannot concatenate 'str' and 'tuple' objects in python 2.7
  • How to split a field within Python and return value in another column?
  • Tkinter + matplot animation filling memory
  • Is it possible for a python file to write another python file?
  • How to use cumsum function group wise in a loop using python
  • Tweepy StreamListener: Tweet when a specified account Tweets
  • Arrange and find most appeared item in the list
  • How do I convert my code to a list expression
  • How do I subtract two columns from the same array and put the value in their own single column array with numpy?
  • How to convert DF to Dictionary
  • Maya python commands: modelEditor (capture flag)
  • Merge based on partial string match in pandas dfs
  • How can I print E number to high n precision? Using my own value
  • PyCharm pip install googlesearch giving error
  • How can I specify an integer index in sympy?
  • shadow
    Privacy Policy - Terms - Contact Us © 35dp-dentalpractice.co.uk